Summary Vietnam is one of the countries with the highest diversity of golden camellias in the world, with more than forty endemic species. However, studies on Vietnamese golden camellias need to be expanded to fill a knowledge gap on these species' chemical profiles and pharmacological properties. This qualitative study focuses on six golden camellias: four endemic species from Tam Dao district, Vinh Phuc province, including Camellia hakodae , Camellia phanii , Camellia tamdaoensis , Camellia tienii and two species commonly cultivated in Quang Ninh province including Camellia petelotii and Camellia euphlebia . A mutual profile of 131 metabolites was obtained by using widely targeted metabolomics analysis using ultra‐performance liquid chromatography coupled with tandem mass spectrometry. Comparative metabolomics was performed among leaf extracts of six golden teas, between young and mature leaves and between freeze‐drying and oven‐drying leaves to discriminate these species, and determine the effect of developmental stage and post‐harvesting method on the plant metabolism. The PLS‐DA model successfully illustrated a clear separation of the six species and suggested apigenin C‐glycoside derivatives as chemical markers for the diversity. Young and mature leaves of all six species also produced distinguished metabolomes, differentiated by mostly amino acid derivatives. The multivariate analysis also indicated the conversion of some flavonoids and amino acids induced by heat in the drying process. These results offer metabolite markers for quality control of Vietnamese golden camellias and recommendations for their usage and preparation.